# STOCKHOLM 1.0
#=GF AU    HMMER 2.2g

#=GS 1JII.pdb            AC    Chain A
#=GS 1JIL.pdb            AC    Chain A
#=GS 1JIJ.pdb            AC    Chain A
#=GS 1JIK.pdb            AC    Chain A
#=GS 1TYA.pdb            AC    Chain E
#=GS 1TYB.pdb            AC    Chain E
#=GS 1TYD.pdb            AC    Chain E
#=GS sp|O67632|SYY_AQUAE AC    Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS) - Aquifex aeolicus.

1JII.pdb                   .....TNVLIEDLKWRGLIYQQTDEQGIEDLLNKEQVTLYCGADPTADSL
1JIL.pdb                   .....TNVLIEDLKWRGLIYQQTDEQGIEDLLNKEQVTLYCGADPTADSL
1JIJ.pdb                   .....TNVLIEDLKWRGLIYQQTDEQGIEDLLNKEQVTLYCGADPTADSL
1JIK.pdb                   .....TNVLIEDLKWRGLIYQQTDEQGIEDLLNKEQVTLYCGADPTADSL
1TYA.pdb                   .....-MDLLAELQWRGLVNQTTDEDGLRKLLNEERVTLYCGFDPTADSL
1TYB.pdb                   .....-MDLLAELQWRGLVNQTTDEDGLRKLLNEERVTLYCGFDPTADSL
1TYD.pdb                   .....-MDLLAELQWRGLVNQTTDEDGLRKLLNEERVTLYCGFDPTADSL
sp|O67632|SYY_AQUAE        mtpeeQLRIIKE----GTVEIIEEEELLKKLKEGRPLRVKAGFDPTAPDL
#=GC RF                    .....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

1JII.pdb                   HIGHLLPFLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQV
1JIL.pdb                   HIGHLLPFLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQV
1JIJ.pdb                   HIGHLLPFLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQV
1JIK.pdb                   HIGHLLPFLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQV
1TYA.pdb                   HIGHLAAILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETV
1TYB.pdb                   HIGHLAGILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETV
1TYD.pdb                   HIGHLASILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETV
sp|O67632|SYY_AQUAE        HLGHVVLLQKLRQFQQLGHEVFFIIGDFTAMIGDPTGRSQTRPPLSREQV
#=GC RF                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

1JII.pdb                   DKNIEGISKQMHNIFEFGTDH-GAVLVNNRDWLGQISLISFLRDYGKHVG
1JIL.pdb                   DKNIEGISKQMHNIFEFGTDH-GAVLVNNRDWLGQISLISFLRDYGKHVG
1JIJ.pdb                   DKNIEGISKQMHNIFEFGTDH-GAVLVNNRDWLGQISLISFLRDYGKHVG
1JIK.pdb                   DKNIEGISKQMHNIFEFGTDH-GAVLVNNRDWLGQISLISFLRDYGKHVG
1TYA.pdb                   EAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFS
1TYB.pdb                   EAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFS
1TYD.pdb                   EAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFS
sp|O67632|SYY_AQUAE        LENAKTYEHQVFKVLIPEKTT----VVFNSTWLEELGTKGLIELCAK-YT
#=GC RF                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

1JII.pdb                   VNYMLGKDSIQSRLEHG..ISYTEFTYTILQAIDFGHLNRELNCKIQVGG
1JIL.pdb                   VNYMLGKDSIQSRLEHG..ISYTEFTYTILQAIDFGHLNRELNCKIQVGG
1JIJ.pdb                   VNYMLGKDSIQSRLEHG..ISYTEFTYTILQAIDFGHLNRELNCKIQVGG
1JIK.pdb                   VNYMLGKDSIQSRLEHG..ISYTEFTYTILQAIDFGHLNRELNCKIQVGG
1TYA.pdb                   VNYMMAKESVQSRIETG..ISFTEFSYMMLQAYDFLRLYETEGCRLQIGG
1TYB.pdb                   VNYMMAKESVQSRIETG..ISFTEFSYMMLQAYDFLRLYETEGCRLQIGG
1TYD.pdb                   VNYMMAKESVQSRIETG..ISFTEFSYMMLQAYDFLRLYETEGCRLQIGG
sp|O67632|SYY_AQUAE        VARMLEREDFSKRFKEGipIYIHEFIYPLLQAYDSVAIKAD----VEIGG
#=GC RF                    xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

1JII.pdb                   SDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDG.KKFGKSESGAVWL
1JIL.pdb                   SDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDG.KKFGKSESGAVWL
1JIJ.pdb                   SDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDG.KKFGKSESGAVWL
1JIK.pdb                   SDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDG.KKFGKSESGAVWL
1TYA.pdb                   SDQWGNITAGLELIRKTK--GRAFGLTIPLVTKADG.TKFGKTESGTIWL
1TYB.pdb                   SDQWGNITAGLELIRKTK--GRAFGLTIPLVTKADG.TKFGKTESGTIWL
1TYD.pdb                   SDQWGNITAGLELIRKTK--GRAFGLTIPLVTKADG.TKFGKTESGTIWL
sp|O67632|SYY_AQUAE        TDQKFNLLIGRD-IQREYGQEPQVCITLPLLVGTDGvRKMSKSYGNYVGI
#=GC RF                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx

1JII.pdb                   DAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHL
1JIL.pdb                   DAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHL
1JIJ.pdb                   DAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHL
1JIK.pdb                   DAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHL
1TYA.pdb                   DKEKTSPYEFYQFWINTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEK
1TYB.pdb                   DKEKTSPYEFYQFWINTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEK
1TYD.pdb                   DKEKTSPYEFYQFWINTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEK
sp|O67632|SYY_AQUAE        TED---PKTMFAKIMSIPDEIMWDWFLLLTDYNKEEIEKMRREM----HP
#=GC RF                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

1JII.pdb                   REAQKTLAEEVTKFIHGEDALNDAIRIS......................
1JIL.pdb                   REAQKTLAEEVTKFIHGEDALNDAIRISqalf..................
1JIJ.pdb                   REAQKTLAEEVTKFIHGEDALNDAIRIS......................
1JIK.pdb                   REAQKTLAEEVTKFIHGEDALNDAIRIS......................
1TYA.pdb                   RAAQKTLAEEVTKLVHGEEALRQAIRIS......................
1TYB.pdb                   RAAQKTLAEEVTKLVHGEEALRQAIRIS......................
1TYD.pdb                   RAAQKTLAEEVTKLVHGEEALRQAIRIS......................
sp|O67632|SYY_AQUAE        MEAKKLLAFTIVKRFHSEEEARKAKEWWektfsqrefpedaplvklnekk
#=GC RF                    xxxxxxxxxxxxxxxxxxxxxxxxxxxx......................

1JII.pdb                   ..................................................
1JIL.pdb                   ..................................................
1JIJ.pdb                   ..................................................
1JIK.pdb                   ..................................................
1TYA.pdb                   ..................................................
1TYB.pdb                   ..................................................
1TYD.pdb                   ..................................................
sp|O67632|SYY_AQUAE        lravdflvkigavksknearrviqggglkingekvtdpnteieingelkv
#=GC RF                    ..................................................

1JII.pdb                   .............
1JIL.pdb                   .............
1JIJ.pdb                   .............
1JIK.pdb                   .............
1TYA.pdb                   .............
1TYB.pdb                   .............
1TYD.pdb                   .............
sp|O67632|SYY_AQUAE        kvgkkkfyrvvsg
#=GC RF                    .............
//